Host Cell Proteins
In biopharmaceutic manufacturing the term host cell proteins (HCPs) clusters proteins impurities derived from the host organism which are present during in the manufacturing process of monoclonal antibodies, antibody-drug-conjugates, therapeutic proteins, and other protein-based biopharmaceuticals.
- What are Host Cell Proteins?
- Custom HCP Antibody and Assay Services
- The Importance of Host Species
- HCP Antibodies
What are Host Cell Proteins?
Quantitation and removal of HCPs in the final drug product to acceptable low levels is essential. Impurities accompanied with recombinant biotherapeutics can significantly affect drug efficacy and cause immunogenicity.
Learn more about HCP in this interview with David Chimento (Vice President of Client Solutions at Rockland Immunochemicals, Inc.)
One of the best approaches to identify and isolate HCPs is an HCP immunoassay, a specialized assay that is against all of the proteins of the cell line that is used to manufacture the therapeutic biopharmaceutical. An antibody generated against all the proteins or as many of the proteins as can be generated against is used to monitor in-process consistency in the purification of that molecule. During bioprocessing with multiple different steps, samples are taken in this anti-host cell protein immunoassay will be used to measure the level of total HCP present and it is used to set specifications for that bioprocess.
Custom HCP Antibody and Assay Services
Are you interested in a custom made antibody and assays tailored for your needs to screen your biological production process for HCP impurities? In that case we have the right program for you at hand.
Benefit from the combined expertise of antibodies-online and our partner Rockland Immunochemicals, Inc. (Rockland). Leverage Rockland’s 15+ years of success generating custom polyclonal HCP antibodies to keep your biopharmaceutical development program meeting deadlines and moving efficiently.
Our comprehensive, fully customizable services cover all aspects of anti-HCP antibody generation, from antigen preparation and assay development to documentation and manufacturing.
Learn more about HCP assay development in this interview with David Chimento (Vice President of Client Solutions at Rockland Immunochemicals, Inc.)
Custom HCP Assays: Get in Touch with our Experts to discuss your Project
Different Expression Host Cells require different HCP Products
The choice of host has the biggest impact on the number of unwanted proteins. For example, E. coli only has ~4,300 genes, whereas CHO cells have ~30,000 genes.3 Although not every host gene will be transcribed and translated to protein, the complexity of host genome together with post-translational modifications present in mammalian cells adds another layer of complexity to host to the purification of host cell impurities.
The most common mammalian cell line used for production of therapeutic monoclonal antibodies and other biological drugs are CHO cells. One of the big advantages of CHO cells is that they produce high amounts of recombinant proteins (3-10 grams per liter of culture). Their other great benefit are their post-translational modifications of the recombinant proteins which function very well in human and make them suitable for human applications.
On the other hand, the choice of CHO as expression system also creates difficulties, especially with regard to the amount of host cell proteins. E. coli only has ~4,300 genes, whereas CHO cells have ~30,000 genes. For example, E. coli only has ~4,300 genes, whereas CHO cells have ~30,000 genes.3 Although not every host gene will be transcribed and translated to protein, the complexity of host genome together with post-translational modifications present in mammalian cells adds another layer of complexity to the purification of host cell impurities. Therefore, monitoring and reducing CHO derived HCPs is one of the biggest challenges in the production process of biological drugs.
A comprehensive list of the most commonly known HCPs occuring in CHO host cells, so called "bad actor proteins", has been published by Biophorum. BioPhorum is the biopharmaceutical industry’s trusted environment where senior leaders of over 135 manufacturers and suppliers tackle industry challenges. antibodies-online offers high quality proteins for each bad actor target. They can help to develop HCP antibodies and assays in this expression system.Proteins for HCP Impurities in CHO Expression Systems
Below you will find an overview of HCP antibodies offered by antibodies-online.com. Currently, antibodies with the reactivity E. coli, CHO and HEK 293T are available. Further information can be obtained by clicking on the links in the table. The HCP antibody you need is not in the list? Get in touch and discuss custom HCP solutions with our expert team.
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- Production of recombinant protein therapeutics in cultivated mammalian cells." in: Nature biotechnology, Vol. 22, Issue 11, pp. 1393-8, (2005) (PubMed). : "
- The art of CHO cell engineering: A comprehensive retrospect and future perspectives." in: Biotechnology advances, Vol. 33, Issue 8, pp. 1878-96, (2016) (PubMed). : "
- Host cell proteins in biologics development: Identification, quantitation and risk assessment." in: Biotechnology and bioengineering, Vol. 103, Issue 3, pp. 446-58, (2009) (PubMed). : "
- Profiling of host cell proteins by two-dimensional difference gel electrophoresis (2D-DIGE): Implications for downstream process development." in: Biotechnology and bioengineering, Vol. 105, Issue 2, pp. 306-16, (2010) (PubMed). : "
- Host Cell Proteins in Biologics Manufacturing: The Good, the Bad, and the Ugly." in: Antibodies (Basel, Switzerland), Vol. 6, Issue 3, (2017) (PubMed). : "
- The future of host cell protein (HCP) identification during process development and manufacturing linked to a risk-based management for their control." in: Biotechnology and bioengineering, Vol. 112, Issue 9, pp. 1727-37, (2016) (PubMed). : "
- Comprehensive assessment of host cell protein expression after extended culture and bioreactor production of CHO cell lines." in: Biotechnology and bioengineering, (2022) (PubMed). : "
- Towards continuous mAb purification: Clearance of host cell proteins from CHO cell culture harvests via "flow-through affinity chromatography" using peptide-based adsorbents." in: Biotechnology and bioengineering, Vol. 119, Issue 7, pp. 1873-1889, (2022) (PubMed). : "
What is a host cell protein and why is it important in biopharmaceutical manufacturing?
A host cell protein is a contaminant that comes from manufacturing of biopharmaceuticals. Biopharmaceuticals are made using an engineered cell line that produces a therapeutic protein. Often times that can be a therapeutic monoclonal antibody. One of the major issues in the purification of the therapeutic monoclonal are proteins that are contaminating coming from the host cell line.
What is a host cell protein immunoassay and what is it used to monitor?
A HCP immunoassay is a specialized assay that is against all of the proteins of the cell line that is used to manufacture the therapeutic biopharmaceutical. It is a very complicated assay where there is an antibody reagent generated against all of the proteins or as many of the proteins as can be generated against and it is used to monitor in-process consistency in the purification of that molecule. What will happen is during the bioprocessing with multiple different steps samples are be taken in this anti-host cell protein immunoassay will be used to measure the level of total HCP present and it is used to set specifications for that bioprocess.
How to select the upstream HCP reference sample? Is it appropriate to take a single upstream HCP sample or should a downstream be used as well?
There is a couple different ways to do that. The reference sample should be chosen, should be representative of your upstream bioprocessing step. Generally it would be considered to be a crude fraction. Maybe sometimes initially post-harvest, but not too far into the bioprocessing workflow.
The second part of the question which was whether or not a single upstream sample was suitable or something also downstream that might be more representative of the enriched contaminating host cell proteins is appropriate, and there is not a single answer for that question. If the resources are available, it is probably good to do both.
Upstream reference materials are going to capture more of the contaminants and it is a good representation of what is happening in the bioprocessing and if there is any issue with the bioprocessing workflow.
Having a downstream sample can be useful for detecting those more specific host cell proteins that may become problematic as the material becomes more pure during its bioprocessing workflow.
What are the animal species used for making HCP reagents?
The animal species used for making anti-host cell protein reagents, most commonly is rabbit or goat. They have been used historically in almost equal amounts. Both are suitable for generating a good broad coverage against all of the HCP proteins, where broad coverage is defined as covering all molecular weights from the very small proteins to the very large proteins.
Typically for the antibodies multiple different animals are used to increase the diversity of the immune response, because any single animal alone will not make antibodies against all of the proteins that are required. So having a diversity of numbers of animals of either species is very important. And then in certain cases – again, if resources are available – one could make reagents using both species and then have the option to pick the one that worked best, or provided the best coverage against the host cell proteins.
It is worth to mention that another species is now being used more frequently. That is chicken. The rational for using chicken is, that it is evolutionarily more diverse or unrelated to the mammalian cells that are used to produce the biopharmaceuticals and it offers the ability to create a more robust immune response against more targets. It hasn’t been used to loo long at this time, so it is difficult to say whether or not, that is true.
What are the ways to improve or ensure good coverage of the produced anti-HCP reagent?
Generating anti-host cell protein reagents can be a challenging process. There are certain protein species within the sample that are poly-immunogenic or at low abundance and often times do not give a good immune response when analyzing by western blot. And so there are a couple of different ways to approach resolving that problem.
One of them is to fractionate the protein into high and low molecular weight species and then immunize one of your animal cohorts with the low molecular weight fraction. What that can do is give you an enhanced immune response or enriched immune response against those low molecular proteins specifically. That can then be combined back with the antisera that was generated against the total HCP reference sample.
Another thing that has been done is a technique called cascade immunization. Cascade immunization is one whereby an animal cohort is immunized with the host cell proteins. Frequently, what will happen is there is several immuno-dominant species of proteins that will demonstrate very good reactivity in western blots. What can be done is they can be purified and used to make an affinity matrix. That affinity matrix can be then used to deplete the host cell protein reference standard of those immuno-dominant protein species. And then the left over material can be concentrated and reimmunized. That can be done a few times and what happens over time – when it works right – is that you start to develop an immune response to the poorly immunogenic proteins.
What techniques are used to qualify HCP antibodies?
2D western blot or DIGE is a technique where the HCP proteins are separated based on their isoelectric point and molecular weight. That’s important because there are so many protein species present in the sample that a simple 1D western blot is not sufficient to see whether or not you are detecting all the protein which maybe masked under the other proteins. So, the way to approach that problem is to separate them using this 2-dimensional technique. They can be measured by western blot where you are demonstrating how many of the existing host cell proteins present in the sample can be detected by an antibody.
And then the DIGE technique, very similar to western blot, uses a fluorescence label and can also be used to determine how many of the HCP protein species are detected by the antibody. The coverage component is really an arbitrary measurement and it is meant to be an indication of the quality of the coverage. General ranges can be 60 to 80% and the number really needs to be a demonstration of the coverage across the whole entire blood. So it can’t just come from one single area.
So as long as your coverage is across most of the protein species over all ranges of isoelectric points and molecular weights and your coverage is above 60 or 80% the antibody is probably a good reagent.
How is an antisera pool made?
Frequently, when producing an anti-host cell protein antibody multiple different animals will be in a cohort for generation of antisera. Not all of the animals are going to be responding in the way that is needed to produce the best possible reagent. Frequently a selection of a subset of the sera collected from those animals will be used. So, the way that that is done: analytical testing is done, that can be 1D western blot and ultimately 2D western blot or DIGE experiments to demonstrate that the reagents have good coverage.
Those reagents that are sufficiently good to get you into the 60 to 80% coverage range across most of the different types of protein species can be pooled together to create a super pool. That then creates a single lot of antisera that can be used for downstream of all of the other things that are needed in purification and assay development.
How is mass spec being used as an orthogonal method for HCP analytical work?
Recently an orthogonal method has been added in addition to 2D western blot as a way to validate anti-host cell protein antibodies. And mass spec has some advantages in that it does not require immunogenicity of the protein species in order to detect it. So in that sense it is unbiased at the different anti-host cell protein species.
What it is been used for frequently now is to characterize the upstream HCP harvest sample in the bioprocessing stream to identify what are all the species that are in there. Subsequently it is now also used to validate anti-host cell protein reagent to complement the 2D western blot experiment and say what specifically is in the sample and also verify that the coverage is acceptable and good.
What is the best method for purification of the HCP-antibody reagent? Purification by Protein A or G, or affinity purification?
A frequent question that often comes up about anti-host cell protein antibodies is what to do once the antisera is generated and qualified. There’s a couple of different decisions to be made and there’s a lot of arguments in the field about what’s the best choice to make.
One is protein A or protein G purification which is used to isolate the IgG fraction of the anti-host cell protein antibody and the other purification method is affinity purification against an HCP reference standard affinity matrix. There is positives and negatives to both and neither one of these procedures is thought to be superior to the other. Protein A has the advantage of being unbiased in its selection of the antibodies. The disadvantage of protein A is that it does not enrich for your anti-host cell protein antibodies but also carries over all of the non-specific antibodies and can lower sensitivity of an immunoassay during assay development.
The advantages of affinity purification are that it can enrich for anti-host cell protein antibodies. So most of the things are going to be reactive in your final antibody purified material are going to be reacting to your anti-host cell proteins. It has the potential problem of being very biased towards the highly immunogenic proteins and may not purify equally across all different versions of antibodies for all the host cell proteins.
So, it is really a kind of a choice of the end user what they think might work best for them, because both have positives and negatives and both are acceptable methods for creating a reagent when submitting to the regulatory agencies.
Does the HCP antibody reagent support a single process or platform process? If platform, how many products can it support?
The anti-host sell protein antibodies can be used to support single processes. In the case where there is a new product being made it requires a special process. In that instance it may be able to use a generic or a custom HCP reagent. And in that case the reagent can be made and tested.
The point here about single process versus platform that’s important to know, if the reagent is going to support platform it is very important that a large amount of material be made to support the platform as it is unknown – generally when it is first started – how many different programs it is going to support. That means that if it starts with three drug programs on that platform it is pretty easy to determine how much of the anti-host cell protein antibody you will need to support that over the long term, however if that platform expands out to five or six or more drug programs you can very quickly deplete that antibody material.
So it is a really important in decision making about how much material you need to make for the long term, to make sure you don’t run out of critical material. Remanufacture, requalifying can be a time consuming and burdensome process that no one wants to go through.